Directory structure
The directory structure of the created datasets is as follows:
Slide directory structure
dataset
βββ <ds-name>-slides
βββ train
β βββ fungal
β β βββ F-slide-1.png
β β βββ F-slide-2.png
β β βββ ...
β βββ non-fungal
β βββ NF-slide-1.png
β βββ NF-slide-2.png
β βββ ...
βββ test
βββ fungal
β βββ F-slide-1.png
β βββ F-slide-2.png
β βββ ...
βββ non-fungal
βββ NF-slide-1.png
βββ NF-slide-2.png
βββ ...
Patches directory structure
dataset
βββ <ds-name>-<downsample_dimensions>
βββ fold-0
β βββ train
β β βββ fungal
β β β βββ F-patch-1.png
β β β βββ F-patch-2.png
β β β βββ ...
β β βββ non-fungal
β β βββ NF-patch-1.png
β β βββ NF-patch-2.png
β β βββ ...
β βββ val
β β βββ fungal
β β β βββ F-patch-1.png
β β β βββ F-patch-2.png
β β β βββ ...
β β βββ non-fungal
β β βββ NF-patch-1.png
β β βββ NF-patch-2.png
β β βββ ...
β βββ test
β βββ fungal
β β βββ F-patch-1.png
β β βββ F-patch-2.png
β β βββ ...
β βββ non-fungal
β βββ NF-patch-1.png
β βββ NF-patch-2.png
β βββ ...
βββ fold-1
β βββ ...
βββ ...
MIL directory structure
dataset
βββ <ds-name>-MIL-<downsample_dimensions>
βββ train
β βββ F-slide-1
β β βββ F-patch-1.png
β β βββ F-patch-2.png
β β βββ ...
β βββ ...
β βββ NF-slide-1
β β βββ NF-patch-1.png
β β βββ NF-patch-2.png
β β βββ ...
β βββ ...
βββ test
βββ F-slide-1
β βββ F-patch-1.png
β βββ F-patch-2.png
β βββ ...
βββ ...
βββ NF-slide-1
β βββ NF-patch-1.png
β βββ NF-patch-2.png
β βββ ...
βββ ...
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